Brandizi M, Singh A, Rawlings C and Hassani-Pak K. (2018).
Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner Use Case. SWAT4LS Paper Proceedings. Singh A, Rawlings C and Hassani-Pak K. (2018).
KnetMaps: a BioJS component to visualize biological knowledge networks. F1000 Research. Brandizi M, Singh A, Rawlings C and Hassani-Pak K. (2018).
Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach. Journal of Integrative Bioinformatics. Hassani-Pak K (2017).
KnetMiner - An integrated data platform for gene mining and biological knowledge discovery. Dissertation. Bielefeld University. Hassani-Pak K and Rawlings C. (2017).
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. Journal of Integrative Bioinformatics. Hassani-Pak K, Castellote M, Esch M, Hindle M, Lysenko A, Taubert J and Rawlings C. (2016).
Developing integrated crop knowledge networks to advance candidate gene discovery. Applied & Translational Genomics. Taubert J, Hassani-Pak K, Castells-Brooke N and Rawlings C. (2014).
Ondex Web: web-based visualization and exploration of heterogeneous biological networks. Bioinformatics. Lysenko A, Defoin-Platel M, Hassani-Pak K, Taubert J, Hodgman C, Rawlings C and Saqi M. (2011).
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics. Defoin-Platel M, Hassani-Pak K, Rawlings C. (2011)
Gaining confidence in cross-species annotation transfer: from simple molecular function to complex phenotypic traits. Aspects of Applied Biology. Hassani-Pak K, Legaie R, Canevet C, van den Berg H, Moore J and Rawlings C. (2010).
Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response. Journal of Integrative Bioinformatics. Selected Citations
Harrington SA, Backhaus AE, Singh A, Hassani-Pak K and Uauy C. (2019).
Validation and Characterisation of a Wheat GENIE3 Network Using an Independent RNA-Seq Dataset. bioRxiv. Alabdullah AK, Borrill P, Martin AC, Ramirez-Gonzalez RH, Hassani-Pak K, Uauy C, Shaw P and Moore G. (2019).
A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization. Frontiers in Plant Science. Hanley SJ and Karp A. (2014).
Genetic strategies for dissecting complex traits in biomass willows (Salix spp.). Tree Physiology. Press Releases